Antibiotic Resistance Pattern of Different Escherichia coli Phylogenetic Groups Isolated from Human Urinary Tract Infection and Avian Colibacillosis

Background : The emergence and propagation of different phylogenetic groups of antimicrobial-resistant E. coli have become a worldwide health concern in human and veterinary medicine. Therefore, the evaluation of the phylogenetic distribution of antibiotic-resistant E. coli is important for therapeutic and economic purposes. The aims of this study were to determine phylogenetic groups and patterns of antibiotic resistance of E. coli strains isolated from human urinary tract infection and avian colibacillosis. Methods: A total of 50 E. coli isolates (25 from human urinary tract infection and 25 from avian colibacillosis) were characterized by culture and assigned as different phylogenetic groups (A, B1, B2, and D) by triplex PCR assay. Kirby-Bauer disk diffusion method was used to assess the susceptibility of all isolates to ten antibiotics. Results: Results showed that the majority of the human and poultry isolates belonged to phylogenetic groups A and B2 and phylogenetic group B1 of the avian pathogenic strain isolates were the most drug-resistant isolates. Most of the isolates were resistant to at least five antibiotics, and multiple drug resistance was observed in 98% of E. coli isolates. A high degree of resistance was seen against penicillin and erythromycin. Conclusion: According to the results of this study, multidrug-resistance among isolates and high relation between phylogenetic groups and resistance in both human and poultry isolates were observed. Key Words: Escherichia coli, Avian colibacillosis, Phylogenetic grouping     

Lead stabilization in a polluted calcareous soil using cost-effective biochar and zeolite amendments after spinach cultivation

Biochar has been shown to be an effective organic soil amendment for the in-situ immobilization of lead (Pb).Little research has been done on the effects of biochar and zeolite interactions on Pb immobilization in contaminated calcareous soils.Therefore,the aim of this study was to investigate the effects of different levels of zeolite (2% and 4%,weight:weight) and biochars (3%,weight:weight) prepared from green compost (GB),poultry manure (PB),and municipal waste (MB) on the content of Pb in sp...     

Screening for probiotic characters in lactobacilli isolated from chickens revealed the intra-species diversity of Lactobacillus brevis

Considering the importance of the poultry industry and the increasing interest in alternative growth promoters, probiotics are considered as a potential candidate for use in the poultry industry. In this study, Lactobacillus species were isolated from 21 rectal swabs of 11 healthy 6-day-old and 10 healthy 21-day-old chickens and their fecal and feed samples. The isolates were characterized and their probiotic characteristics, including resistance to gastric acid and bile salts, biofilm formation and adherence to epithelium or mucus, amylase and protease activity and production of inhibitory compounds, were assessed. From 31 acid and bile resistant lactobacilli, only 2 Lactobacillus brevis and 1 Lactobacillus reuteri strains showed significant probiotic properties. These isolates indicated detectable attachment to Caco-2 cells and significant antibacterial activities against Gram-positive and Gram-negative pathogens. Additionally, phenotypic and genotypic diversity of lactobacilli isolates were studied by Phene Plate (PhP) system (PhP-LB) and random amplified polymorphic DNA (RAPD)-PCR, respectively. PhP-LB results of 24 L. brevis isolates showed a high phenotypic variation among the isolates. In comparison, results of RAPD-PCR highlighted a low diversity. Therefore, it seems that combination of the 2 techniques (PhP and RAPD-PCR) could result in a significant discriminatory power than each of them used alone.     

Effect of Organic Residues and Their Derived Biochars on the Zinc and Copper Chemical Fractions and Some Chemical Properties of a Calcareous Soil

ABSTRACT

Addition of more resistant organic materials, such as biochars, to soils not only enhances soil C sequestration but also can also benefit soil fertility. The aim of this study was to investigate the effect of two organic materials (sheep manure and vermicompost) and their biochars produced at two pyrolysis temperatures (300 and 500°C) applied at 5% (w/w) on the chemical fractions of Zn and Cu and some chemical characteristics of an unpolluted, light textured calcareous soil. Addition of the raw organic materials and their-derived biochars significantly enhanced plant available K, P, and Zn but significantly decreased plant available Cu in the soil. Sheep manure biochar produced at 300°C was most effective at increasing plant available P (13-fold) and K (1.9 fold) likely due to formation of more soluble forms of P and K compared to raw material or biochar produced at higher temperature (500°C). Whereas, raw vermicompost and sheep manure were most effective at enhancing plant available Zn, by increasing water soluble and exchangeable Zn fraction likely due to organic complexation. All amendments, especially biochars produced at 300°C reduced water soluble and exchangeable Cu mainly attributed to increased soil P availability. The results of this study showed that in the short-term, addition of the low-temperature biochars was best for enhancing soil P and K availability, but concomitantly reduced Cu availability the most, whereas, addition of the raw organic materials was better for enhancing Zn availability compared to the biochars.     

Molecular diagnostics for the sigatoka disease complex of banana

ABSTRACT The Sigatoka disease complex of banana involves three related ascomycetous fungi, Mycosphaerella fijiensis, M. musicola, and M. eumusae. The exact distribution of these three species and their disease epidemiology remain unclear, because their symptoms and life cycles are rather similar. Disease diagnosis in the Mycosphaerella complex of banana is based on the presence of host symptoms and fungal fruiting structures, which hamper preventive management strategies. In the present study, we have developed rapid and robust species-specific molecular-based diagnostic tools for detection and quantification of M. fijiensis, M. musicola, and M. eumusae. Conventional species-specific polymerase chain reaction (PCR) primers were developed based on the actin gene that detected DNA at as little as 100, 1, and 10 pg/mul from M. fijiensis, M. musicola, and M. eumusae, respectively. Furthermore, TaqMan real-time quantitative PCR assays were developed based on the beta-tubulin gene and detected quantities of DNA as low as 1 pg/mul for each Mycosphaerella sp. from pure cultures and DNA at 1.6 pg/mul per milligram of dry leaf tissue for M. fijiensis that was validated using naturally infected banana leaves.     

The effect of salicylic and jasmonic acids on tomato physiology and tolerance to <Emphasis Type="Italic">Cucumber mosaic virus</Emphasis> (CMV)

Cucumber mosaic virus (CMV) is one of the most important plant viruses responsible for sharp reductions in the production of many cultivated plants. Activities of antioxidant enzymes, photosynthetic capacity, proline and total soluble carbohydrates (TSC) content were measured in the leaves of tomato (Solanum lycopercicum cv. Falat) plants treated with phytohormones (salicylic and jasmonic acids and their combination) and inoculated with CMV at 0, 1, 2, 4, 6, 8, and 15 days after the treatments. Based on the results, catalase (CAT) activity decreased in the healthy and infected plants, but peroxidase (POD) activity increased in the CMV-infected plants signifying that POD is more active in H₂O₂ scavenging in tomato. Because the hormone treatments inhibited the reduction in the enzyme activity, it may be considered as a controlling method against CMV. Superoxide dismutase (SOD) activity was lower in the control until 6 days post inoculation (dpi), but increased after 8 dpi. The infected plants and the hormone-treated plants showed an increased SOD activity from 0 to 15 dpi. Phenylalanine ammonia lyase (PAL) activity also increased in all the treatments over the time period (0-15 dpi). Net photosynthesis (NP) rate and chlorophyll content decreased under the virus infection and hormone treatment, whereas control plants had the highest NP and chlorophyll content. Proline accumulation occurred in the infected and hormone- treated plants, but TSC content decreased in comparison to the control. Reduction of TSC content was not significant in the hormone and virus- treated plants. Expression of CMV coat protein gene (CMV-CP) was decreased by approximately 34% in SA+JA+CMV treatment in comparison to the CMV-infected plants. In conclusion, CMV had harmful effect on physiological traits of tomato plants, but hormone application induced resistance. This resistance may be accomplished through the combination of both hormone-related signaling pathways which likely established a strong resistance network together.     

Tracking the Transport of Silver Nanoparticles in Soil: a Saturated Column Experiment

Silver nanoparticles (AgNPs) can enter the environment when released from products containing them. As AgNPs enter soil, they are often retained in the soil profile and/or leached to the groundwater. This research assessed the transport of AgNPs in their “particle form” through the soil profile using a series of columns. Three soil types were put into soil columns: LSH (loam with high organic matter (OM)), LSL (loam with low OM), and Sand (no OM). The results showed that AgNP transport and retention in soil as well as particle size changes are affected by soil organic matter (OM) and the cation exchange capacity (CEC) of soil. OM affected the transport and retention of AgNPs. This was evident in the LSH columns where the OM concentration was the highest and the AgNP content the lowest in the soil layers and in the effluent water. The highest transported AgNP content was detected in the Sand columns where OM was the lowest. CEC had an impact on the particle size of the AgNPs that were retained in the soil layers. This was clear in columns packed with high CEC-containing soils (LSL and LSH) where AgNP particle size decreased more substantially than in the columns packed with sand. However, the decrease in AgNP sizes in the effluent water was less than the decrease in particle size of AgNPs transported through but retained in the soil. This means that the AgNPs that reached the effluent were transported directly from the first layer through the soil macropores. This work highlights the ability to track AgNPs at low concentrations (50 μg kg^?1) and monitor the changes in particle size potential as the particles leach through soil all of which increases our knowledge about AgNP transport mechanisms in porous media.     

Effects of host plant morphological features on the functional response of Adalia bipunctata (Coleoptera: Coccinellidae) to Myzus persicae (Hemiptera: Aphididae)

The effect of three selected plants on the functional response of Adalia bipunctata to different densities of Myzus persicae was examined in Petri-dish arenas. Logistic regression indicated a type II functional response on all plants. The maximum number of prey killed per day by females was 65.4 at a density of 130 preys on sweet pepper. On the other hand, handling time was significantly longer on tomato than on eggplant or sweet pepper (0.35 h vs. 0.24 h and 0.21 h, respectively). This laboratory study suggests that plant characteristics influence the ability of A. bipunctata to respond to changes in prey density.     

Corms as a source of explants for the successful clonal propagation of <Emphasis Type="Italic">Crocus cancellatus</Emphasis>

The genus Crocus comprises plants with a potential to be developed as a new ornamental crop but to date, there are not many reports on in vitro propagation of many members of this genus. The present study involves in vitro propagation of Crocus cancellatus with ornamental and horticultural value. Two different types of corm explants (apical and basal halves of corms) were cultivated onto Murashige and Skoog’s (MS) medium supplemented with different levels of α-naphthalene acetic acid (NAA) and 6-benzylaminopurine (BAP). One to five cormlets emerged from every responding explant through direct organogenesis. Apical halves of corms were more highly responsive than basal halves and produced a maximum multiplication rate with 3.45 ± 0.06 cormlets per explant in 95.33 ± 2.33% of the explants in MS medium supplemented with 3% sucrose and 2 mg L⁻¹ NAA and 1 mg L⁻¹ BAP. The effect of cold storage temperature on in vitro cormlets sprouting was studied. Cormlets stored at 4°C for 8 weeks had more statistically significant positive effects on cormlets sprouting from the controls. In vitro rooting of cormlets was induced on MS medium without plant hormones.     

Single and competitive adsorption isotherms of some heavy metals onto a light textured calcareous soil amended with agricultural wastes-biochars

This study investigated the adsorption behavior of selected heavy metals (Pb, Cu, and Ni) under single and multi-metal conditions by a light textured calcareous soil amended with plant residue biochars (corn straw, wheat straw, rice husk and licorice root pulp each at 3% w/w). The Freundlich isotherm best described the heavy metal adsorption suggesting multilayer adsorption. For all treatments under both adsorption conditions, the heavy metal adsorption capacity followed the order of Pb > Cu > Ni, which was associated with the hydrolysis constant, ionic radius, and electronegativity of these metals. Simultaneous presence of multiple metals decreased the adsorption capacity for each metal and the sequence was in the order of Ni > Pb > Cu. The corn straw biochar (CSB) had the highest adsorption capacity (Freundlich K_f (mg g^?1) for Ni = 0.23, Cu = 1.41 and Pb = 2.73) and medium distribution coefficient (K_{d medium}(L kg^?1) for Ni = 59.30, Cu = 1961.00 and Pb = 2602.00), indicating the CSB is the best treatment for stabilization of heavy metals in the soil. This was associated with the chemical characteristics of the CSB (high amounts of CaCO₃ and P) and the greatest increase in soil pH value.